Networks & graphs
Tools open source to explore relationships: people, organizations, citations, links… as nodes and connections.
Cytoscape Open-source desktop platform for network analysis and visualization.
Cytoscape.js Open-source JS library for graph visualization/analysis in the browser.
Gephi Open-source tool for exploring and visualizing graphs.
igraph Open-source network analysis library (R/Python/C/C++).
sigma.js Open-source WebGL renderer for large graphs in the browser.
Graphviz Open-source graph visualization software using the DOT language.
SNAP Open-source library for large-scale network analysis (C++/Python).
vis.js (community) Open-source libraries for interactive networks and timelines on the web.